Conduct Research

Autosubmit is an open source Python experiment and workflow manager used to manage complex workflows on Cloud and HPC platforms. Autosubmit uses RO-Crate to package the configuration, traces (logs, metrics, databases, etc.), and data of experiments and workflows.

JAX BioConnect is an index of research data that supports data sharing, high-quality curation, and consistent data description.

The COMPSs programming model is able to record Workflow Provenance in RO-Crate format, for governance and reproducibility of computational experiments

The Data Stewardship Wizard (DSW) is an interactive platform for making data management plans

RO-Crate is used to describe digital twins in a number of projects studying earth systems and biodiversity. These include DT-GEO, BioDT, EDITO-Infra, and Destination Earth.

FAIRSCAPE is a framework for reusable cloud-based computations using ARK identifiers with rich provenance in an evidence graph and the Evidence Graph Ontology (EVI)

Galaxy is a platform for FAIR data analysis which supports the building and execution of workflows. It can import and export RO-Crates for both regular datasets and workflow executions.

LabID is an all-in-one research data management platform for life sciences institutes. It uses RO-Crate as a format to import/export workflows and workflow runs.

LifeMonitor is a testing and monitoring service for computational workflows being developed as part of the EOSC-Life project. It aims to facilitate the execution, monitoring and sharing of workflow tests over time, allowing to detect deviations from expected workflow operation and provide useful feedback to the workflow authors

LivePublication is a proof of concept of an executable paper, which interactive visualization and statistical calculations can be regenerated on the fly taking into consideration data sources updated after the paper’s publication date.

By adopting the RO-Crate standard, M@TE packages numerical Earth system models with comprehensive metadata describing code, inputs, outputs, provenance, and authorship. This makes models machine-actionable, reproducible, and citable, supporting open science and bridging the gap between traditional geology and numerical geosciences.

nf-prov is a Nextflow plugin to generate provenance information for pipeline runs. It includes support for the Workflow Run RO-Crate format.

Reproducible XAFS Analyses publishes reproducible X-ray absorption fine structure (XAFS) analyses using Galaxy RO-Crates, targeting the area of Catalysis.

Research Object Composer is a REST API for gradually building and depositing Research Objects according to a pre-defined profile.

ROHub is a solution for the storage, lifecycle management and preservation of scientific work and operational processes via research objects. It makes these resources available to others, allows to publish and release them through a DOI, and allows to discover and reuse pre-existing scientific knowledge.

The Survey Ontology is an open vocabulary that allows representing, annotating and sharing a representation of the survey structure and the gathered responses.

TLCMap is a set of tools that work together for mapping Australian history and culture which includes downloads of geographical data packaged in RO-Crate

The UTS Research Data Repository is a searchable portal for discovering and accessing public datasets by UTS researchers.

WfExS-backend is a high-level workflow execution command line program that consumes and creates RO-Crates, focusing on the interconnection of content-sensitive research infrastructures for handling sensitive human data analysis scenarios

Senckenberg’s Wildlive data portal, is a repository and analysis platform for biodiversity monitoring.

WorkflowHub imports and exports Workflow RO-Crates, using it as an exchange format. They are a specialization of RO-Crate for packaging an executable workflow with all necessary documentation. It is aligned with, and intends to strictly extend, the more general Bioschemas ComputationalWorkflow profile.

The Semantic Technologies (SemTec) team in ZB MED uses GitHub pages to share research projects and corresponding research artefacts/outcomes.