RO2018 proceedings

Proceedings of Workshop on Research Objects (RO2018)

The below articles and abstracts were reviewed to be accepted for RO2018 following the call for contributions. See also the schedule for the corresponding talks. RO2018 encouraged open peer review, and recommend that reviewers are named and attributed; however reviewers may be anonymous if so desired. Reviews will be added to this page later.

News

Published papers

Three short research papers were accepted for talks at RO2018 and have been published in the IEEE eScience 2018 [archived 2019-08-01] official conference proceedings https://doi.org/10.1109/e-Science43179.2018.

Stian Soiland-Reyes, Marcos Cáceres (2018):
The Archive and Package (arcp) URI scheme.
2018 IEEE 14th International Conference on e-Science (e-Science)
https://doi.org/10.1109/eScience.2018.00018
Preprint: https://doi.org/10.5281/zenodo.1320264 [html] [pdf] [research object]
Camera-ready: arXiv:1809.06935 [pdf]

Bryce Mecum, Matthew Jones, Dave Vieglais, Craig Willis (2018):
Preserving Reproducibility: Provenance and Executable Containers in DataONE Data Packages.
2018 IEEE 14th International Conference on e-Science (e-Science)
https://doi.org/10.1109/eScience.2018.00019
Preprint: https://doi.org/10.5281/zenodo.1313218 [pdf]
Camera-ready: https://doi.org/10.5281/zenodo.1420531 [pdf]

Raul Palma, Andrés García-Silva, Jose Manuel Gomez-Perez, Marcin Krystek (2018):
A Research Object-based Toolkit to Support the Earth Science Research Lifecycle.
2018 IEEE 14th International Conference on e-Science (e-Science)
https://doi.org/10.1109/eScience.2018.00020
Preprint: https://doi.org/10.24424/ro-id.J8MDSX693G [pdf] [research object]
Camera-ready: https://doi.org/10.24424/ro-id.DBIMALEDRQ [pdf] [html .zip] [research object]

Publications in the IEEE eScience 2018 proceedings are delayed open access [archived 2019-08-01] after one year. To encourage Green Open Access before that we recommended paper authors post their camera-ready version on arXiv or their institutional preprint server according to IEEE’s article sharing policies.

Accepted for talks

These abstracts have been accepted for talks at RO2018:

Anita Bandrowski, Tom Gillespie, Mary Ann Martone (2018):
Research Resource IDentifiers for Key Biological Resources.
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1412731

Daniella Lowenberg, Elizabeth Hull (2018):
Community Needs and Priorities for the Future of Open Data Publishing: Dryad & California Digital Library.
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1299320

Rachael Lammey (2018):
Mapping relationships between research objects.
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1410238

Jo Barratt, Serah Rono (2018):
Frictionless Data and Data Packages.
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1301152

Folker Meyer, Robert Finn, Wolfgang Gerlach, Alex Mitchell, Travis Harrison, Andreas Wilke (2018):
On the way to research objects for environmental genomics (or metagenomics).
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1309962

Ravi Madduri, Kyle Chard, Michael D’Arcy, Segun Jung, Alexis Rodriguez, Dinanath Sulakhe, Eric Deutsch, Cory Funk, Ben Heavner, Matthew Richards, Paul Shannon, Gustavo Glusman, Nathan Price, Carl Kesselman, Ian Foster (2018):
Reproducible big data science: A case study in continuous FAIRness.
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1310034

Peter Wittenburg, Dimitris Koureas, Larry Lannom, Robert Quick (2018):
Implementing a Flexible Infrastructure for a Digital Object Based Data Management.
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1310621

Michael Aufreiter, Naomi Penfold (2018):
The Reproducible Document Stack reinvents the journal publication for a world of computationally reproducible research.
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1311612

Peter Sefton, Michael Lynch, Gerard Devine, Duncan Loxton (2018):
DataCrate: a method of packaging, distributing, displaying and archiving Research Objects.
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1445817
(html) (pdf) (DataCrate) (zip)

Oya Beyan, Andrea Wuchner, Dirk Eisengräber-Pabst, Christoph Quix, Christian Zaschke, Oliver Schumacher (2018):
Research Data in the Fraunhofer Digital Project: Creating a FAIR Research Data Infrastructure and Culture.
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1441011

Stian Soiland-Reyes, Farah Zaib Khan, Richard O. Sinnott, Andrew Lonie, Michael R Crusoe, Carole Goble (2018):
Capturing interoperable reproducible workflows with Common Workflow Language.
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1312623

Kristi Holmes, Karen Gutzman, Patricia Smith, David Eichmann, Melissa Haendel (2018):
Making it count: a computational approach to attribution.
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1312651

Carole Goble, Stian Soiland-Reyes, Sean Bechhofer (2018):
Research Object Community Update.
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1313066

Paolo Manghi, Michele Manunta, Miriam Baglioni, Alessia Bardi, Francesco Casu, Claudio De Luca, Argiro Kokogiannaki (2018):
Enabling Open Science publishing for Research Infrastructures via OpenAIRE: The EPOS use-case.
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1412509

Accepted for poster/demo

These submissions have been accepted for poster/demo session and lightning talks at RO2018:

Edgar Garriga Nogales, Paolo Di Tommaso, Cedric Notredame (2018):
Nextflow integration for the Research Object Specification. Poster.
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
Abstract: https://doi.org/10.5281/zenodo.1323831

David De Roure, Graham Klyne, Kevin Page, John Pybus, David M. Weigl, Pip Willcox (2018):
Digital Music Objects: Research Objects for Music. Poster.
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
Abstract: https://doi.org/10.5281/zenodo.1442453