Packaging research artefacts with RO-Crate

⬇️🏷️ Download all the metadata for Packaging research artefacts with RO-Crate in JSON-LD format

Packaging research artefacts with RO-Crate

@id ./
name [?] Packaging research artefacts with RO-Crate
@type Dataset
description [?] This is the RO-Crate for the article about RO-Crate, submitted to Data Science. The manuscript is included in HTML and PDF versions. Additionally this crate adds the latest RO-Crate specifications and known RO-Crate implementations.
datePublished [?] 2022-01-10T11:00:00Z
author [?]
abstract [?] An increasing number of researchers support reproducibility by including pointers to and descriptions of datasets, software and methods in their publications. However, scientific articles may be ambiguous, incomplete and difficult to process by automated systems. In this paper we introduce RO-Crate, an open, community-driven, and lightweight approach to packaging research artefacts along with their metadata in a machine readable manner. RO-Crate is based on Schema.org annotations in JSON-LD, aiming to establish best practices to formally describe metadata in an accessible and practical way for their use in a wide variety of situations. An RO-Crate is a structured archive of all the items that contributed to a research outcome, including their identifiers, provenance, relations and annotations. As a general purpose packaging approach for data and their metadata, RO-Crate is used across multiple areas, including bioinformatics, digital humanities and regulatory sciences. By applying “just enough” Linked Data standards, RO-Crate simplifies the process of making research outputs FAIR while also contributes to enhancing research reproducibility.
contributor [?]
creativeWorkStatus [?] published
encoding [?]
hasPart [?]
identifier [?] https://doi.org/10.5281/zenodo.5146227
isBasedOn [?] Packaging research artefacts with RO-Crate
mainPart Packaging research artefacts with RO-Crate
review [?] DataScience submission 706-1686: Packaging research artefacts with RO-Crate
keywords [?] Research Object, Linked Data, Scholarly Communication, Data publishing, Data packaging, FAIR, Metadata, Reproducibility
license [?] Creative Commons Attribution 4.0 International
mentions [?]
publisher [?] ResearchObject.org
sameAs [?] undefined
url [?] https://w3id.org/ro/doi/10.5281/zenodo.5146227
Items that reference this one
about [?] ro-crate-metadata.json


Go to: Stian Soiland-Reyes



Go to: Peter Sefton



Go to: Mercè Crosas



Go to: Leyla Jael Castro



Go to: Frederik Coppens



Go to: José María Fernández



Go to: Daniel Garijo



Go to: Björn Grüning



Go to: Marco La Rosa



Go to: Simone Leo



Go to: Eoghan Ó Carragáin



Go to: Marc Portier



Go to: Ana Trisovic



Go to: RO-Crate Community



Go to: Paul Groth



Go to: Carole Goble



Contributions by Stian Soiland-Reyes



Contributions by Peter Sefton



Contributions by Mercè Crosas

@id #role-0000-0003-1304-1939
name [?] Contributions by Mercè Crosas
@type Role
additionalType [?]
contributor [?] Mercè Crosas
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by LJ Garcia Castro

@id #role-0000-0003-3986-0510
name [?] Contributions by LJ Garcia Castro
@type Role
additionalType [?]
contributor [?] https://orcid.org/0000-0003-3986-0510
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Frederik Coppens

@id #role-0000-0001-6565-5145
name [?] Contributions by Frederik Coppens
@type Role
additionalType [?]
contributor [?] Frederik Coppens
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by José María Fernández

@id #role-0000-0002-4806-5140
name [?] Contributions by José María Fernández
@type Role
additionalType [?]
contributor [?] José María Fernández
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Daniel Garijo

@id #role-0000-0003-0454-7145
name [?] Contributions by Daniel Garijo
@type Role
additionalType [?]
contributor [?] Daniel Garijo
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Björn Grüning

@id #role-0000-0002-3079-6586
name [?] Contributions by Björn Grüning
@type Role
additionalType [?] writing review and editing role
contributor [?] https://orcid.org/0000-0002-3079-6586
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Marco La Rosa

@id #role-0000-0001-5383-6993
name [?] Contributions by Marco La Rosa
@type Role
additionalType [?]
contributor [?] Marco La Rosa
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Simone Leo

@id #role-0000-0001-8271-5429
name [?] Contributions by Simone Leo
@type Role
additionalType [?]
contributor [?] Simone Leo
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Eoghan Ó Carragáin

@id #role-0000-0001-8131-2150
name [?] Contributions by Eoghan Ó Carragáin
@type Role
additionalType [?]
contributor [?] Eoghan Ó Carragáin
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Marc Portier

@id #role-0000-0002-9648-6484
name [?] Contributions by Marc Portier
@type Role
additionalType [?]
contributor [?] Marc Portier
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Ana Trisovic

@id #role-0000-0003-1991-0533
name [?] Contributions by Ana Trisovic
@type Role
additionalType [?]
contributor [?] Ana Trisovic
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by RO-Crate Community

@id #role-community
name [?] Contributions by RO-Crate Community
@type Role
additionalType [?]
contributor [?] RO-Crate Community
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Paul Groth

@id #role-0000-0003-0183-6910
name [?] Contributions by Paul Groth
@type Role
additionalType [?]
contributor [?] Paul Groth
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Carole Goble



Contributions by Finn Bacall

@id #role-0000-0002-0048-3300
name [?] Contributions by Finn Bacall
@type Role
additionalType [?]
contributor [?] Finn Bacall
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Herbert Van de Sompel

@id #role-0000-0002-0715-6126
name [?] Contributions by Herbert Van de Sompel
@type Role
additionalType [?]
contributor [?] Herbert Van de Sompel
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Ignacio Eguinoa

@id #role-0000-0002-6190-122X
name [?] Contributions by Ignacio Eguinoa
@type Role
additionalType [?]
contributor [?] Ignacio Eguinoa
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Nick Juty

@id #role-0000-0002-2036-8350
name [?] Contributions by Nick Juty
@type Role
additionalType [?]
contributor [?] Nick Juty
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Oscar Corcho

@id #role-0000-0002-9260-0753
name [?] Contributions by Oscar Corcho
@type Role
additionalType [?] writing review and editing role
contributor [?] Oscar Corcho
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Stuart Owen

@id #role-0000-0003-2130-0865
name [?] Contributions by Stuart Owen
@type Role
additionalType [?] writing review and editing role
contributor [?] Stuart Owen
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Laura Rodríguez-Navas

@id #role-0000-0003-4929-1219
name [?] Contributions by Laura Rodríguez-Navas
@type Role
additionalType [?]
contributor [?] Laura Rodríguez-Navas
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Contributions by Alan R Williams

@id #role-0000-0003-3156-2105
name [?] Contributions by Alan R Williams
@type Role
additionalType [?]
contributor [?] Alan R Williams
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Reviewed by by Angelo A.

@id #role-0000-0002-4763-3943
name [?] Reviewed by by Angelo A.
@type Role
additionalType [?] peer review role
contributor [?] Angelo A.
Items that reference this one
contributor [?]


Reviewed by Alessia Bardi

@id #role-0000-0002-1112-1292
name [?] Reviewed by Alessia Bardi
@type Role
additionalType [?] peer review role
contributor [?] Alessia Bardi
Items that reference this one
contributor [?]


Reviewed by (anonymous)

@id #role-reviewer-3
name [?] Reviewed by (anonymous)
@type Role
additionalType [?] peer review role
contributor [?] (anonymous)
Items that reference this one
contributor [?]


Metareviewed by editor Silvio Peroni

@id #role-0000-0003-0530-4305
name [?] Metareviewed by editor Silvio Peroni
@type Role
additionalType [?]
contributor [?] Silvio Peroni
Items that reference this one
contributor [?] Packaging research artefacts with RO-Crate


Go to: published

@id http://purl.org/spar/pso/published
name [?] published
@type DefinedTerm
Items that reference this one
creativeWorkStatus [?]


⬇️ Download: Packaging research artefacts with RO-Crate (HTML)

@id manuscript.html
name [?] Packaging research artefacts with RO-Crate (HTML)
@type
  • File
  • ScholarlyArticle
description [?] HTML manuscript of the RO-Crate article, created by Manubot
author [?]
creativeWorkStatus [?] proof
abstract [?] An increasing number of researchers support reproducibility by including pointers to and descriptions of datasets, software and methods in their publications. However, scientific articles may be ambiguous, incomplete and difficult to process by automated systems. In this paper we introduce RO-Crate, an open, community-driven, and lightweight approach to packaging research artefacts along with their metadata in a machine readable manner. RO-Crate is based on Schema.org annotations in JSON-LD, aiming to establish best practices to formally describe metadata in an accessible and practical way for their use in a wide variety of situations. An RO-Crate is a structured archive of all the items that contributed to a research outcome, including their identifiers, provenance, relations and annotations. As a general purpose packaging approach for data and their metadata, RO-Crate is used across multiple areas, including bioinformatics, digital humanities and regulatory sciences. By applying “just enough” Linked Data standards, RO-Crate simplifies the process of making research outputs FAIR while also contributes to enhancing research reproducibility.
isBasedOn [?] GitHub markdown for manuscript: Packaging research artefacts with RO-Crate
url [?] https://stain.github.io/ro-crate-paper/v/4f1ce872ac51f6149e8128deddd32d0582d74015/
Items that reference this one
encoding [?] Packaging research artefacts with RO-Crate
hasPart [?] Packaging research artefacts with RO-Crate
result [?] Manubot GitHub action built HTML


⬇️ Download: Packaging research artefacts with RO-Crate (PDF)

@id manuscript.pdf
name [?] Packaging research artefacts with RO-Crate (PDF)
@type
  • File
  • ScholarlyArticle
description [?] PDF manuscript of the RO-Crate article, created by Texlive
author [?]
abstract [?] An increasing number of researchers support reproducibility by including pointers to and descriptions of datasets, software and methods in their publications. However, scientific articles may be ambiguous, incomplete and difficult to process by automated systems. In this paper we introduce RO-Crate, an open, community-driven, and lightweight approach to packaging research artefacts along with their metadata in a machine readable manner. RO-Crate is based on Schema.org annotations in JSON-LD, aiming to establish best practices to formally describe metadata in an accessible and practical way for their use in a wide variety of situations. An RO-Crate is a structured archive of all the items that contributed to a research outcome, including their identifiers, provenance, relations and annotations. As a general purpose packaging approach for data and their metadata, RO-Crate is used across multiple areas, including bioinformatics, digital humanities and regulatory sciences. By applying “just enough” Linked Data standards, RO-Crate simplifies the process of making research outputs FAIR while also contributes to enhancing research reproducibility.
creativeWorkStatus [?] proof
isBasedOn [?] GitHub markdown for manuscript: Packaging research artefacts with RO-Crate
Items that reference this one
encoding [?] Packaging research artefacts with RO-Crate
hasPart [?] Packaging research artefacts with RO-Crate
result [?] LaTeX GitHub action built PDF


Go to: RO-Crate Metadata Specification 1.1.1



⬇️ Download: Response to peer review, Data Science submission 706-1686

@id response.pdf
name [?] Response to peer review, Data Science submission 706-1686
@type
  • File
  • Comment
datePublished [?] 2021-11-27T02:05:00Z
author [?]
encodingFormat [?] application/pdf
about [?] DataScience submission 706-1686: Packaging research artefacts with RO-Crate
url [?] https://docs.google.com/document/d/1o6sHXzpDYpJUtkHRsEnQMdLD2vU5BLwRa1blgcjHGGE/edit#
Items that reference this one
hasPart [?] Packaging research artefacts with RO-Crate
resultComment [?] Responding to peer review


A simplified RO-Crate (Listing 1)

@id listing1/
name [?] A simplified RO-Crate (Listing 1)
@type Dataset
description [?] This example crate expands Listing 1 in the paper Packaging research artefacts with RO-Crate
isBasedOn [?] Listing 1: Simplified RO-Crate metadata file
subjectOf [?]
Items that reference this one
hasPart [?] Packaging research artefacts with RO-Crate


RO-Crate Software (Table 1)

@id software/
name [?] RO-Crate Software (Table 1)
@type Dataset
description [?] Applications and libraries implementing RO-Crate, targeting different types of users across multiple programming languages. creativeWorkStatus is indicative as assessed by this work (Alpha < Beta < Release Candidate (RC) < Release)
hasPart [?]
Items that reference this one
hasPart [?] Packaging research artefacts with RO-Crate


Go to: Research Object Crate (RO-Crate) website

@id https://w3id.org/ro/crate/
name [?] Research Object Crate (RO-Crate) website
@type WebSite
url [?] https://www.researchobject.org/ro-crate/
Items that reference this one
hasPart [?] Packaging research artefacts with RO-Crate


Go to: Packaging research artefacts with RO-Crate

@id https://doi.org/10.5281/zenodo.5744421
name [?] Packaging research artefacts with RO-Crate
@type
  • ScholarlyArticle
  • Dataset
datePublished [?] 2021-08-13T14:00:00Z
isBasedOn [?] Packaging research artefacts with RO-Crate
creativeWorkStatus [?] undefined
url [?] https://arxiv.org/abs/2108.06503v2
Items that reference this one
isBasedOn [?] Packaging research artefacts with RO-Crate


Go to: Packaging research artefacts with RO-Crate



Go to: DataScience submission 706-1686: Packaging research artefacts with RO-Crate



Go to: Creative Commons Attribution 4.0 International

@id https://spdx.org/licenses/CC-BY-4.0
name [?] Creative Commons Attribution 4.0 International
@type CreativeWork
description [?] This is a human-readable summary of (and not a substitute for) the license. You are free to: Share — copy and redistribute the material in any medium or format Adapt — remix, transform, and build upon the material for any purpose, even commercially. This license is acceptable for Free Cultural Works. The licensor cannot revoke these freedoms as long as you follow the license terms. Under the following terms: Attribution — You must give appropriate credit, provide a link to the license, and indicate if changes were made. You may do so in any reasonable manner, but not in any way that suggests the licensor endorses you or your use. No additional restrictions — You may not apply legal terms or technological measures that legally restrict others from doing anything the license permits. Notices: You do not have to comply with the license for elements of the material in the public domain or where your use is permitted by an applicable exception or limitation. No warranties are given. The license may not give you all of the permissions necessary for your intended use. For example, other rights such as publicity, privacy, or moral rights may limit how you use the material.
identifier [?] CC-BY-4.0
url [?] https://creativecommons.org/licenses/by/4.0/
version [?] 4.0
Items that reference this one
license [?] Packaging research artefacts with RO-Crate


Go to: Manubot GitHub action built HTML

@id https://github.com/stain/ro-crate-paper/actions/runs/1671704143
name [?] Manubot GitHub action built HTML
@type CreateAction
description [?] ci/deploy.sh
startTime [?] 2022-01-08T16:19:22Z
endTime [?] 2022-01-08T16:26:41Z
instrument [?] Manubot
object [?] GitHub markdown for manuscript: Packaging research artefacts with RO-Crate
result [?] Packaging research artefacts with RO-Crate (HTML)
Items that reference this one
mentions [?] Packaging research artefacts with RO-Crate


Go to: LaTeX GitHub action built PDF

@id https://github.com/stain/ro-crate-paper/actions/runs/1671704144
name [?] LaTeX GitHub action built PDF
@type CreateAction
description [?] make LATEXMK=latexmk
startTime [?] 2022-01-08T16:19:22Z
endTime [?] 2022-01-08T16:21:12Z
instrument [?] Docker image for texlive
object [?] GitHub markdown for manuscript: Packaging research artefacts with RO-Crate
result [?] Packaging research artefacts with RO-Crate (PDF)
Items that reference this one
mentions [?] Packaging research artefacts with RO-Crate


Responding to peer review

@id #response
name [?] Responding to peer review
@type ReplyAction
startTime [?] 2021-10-04T13:44:00Z
endTime [?] 2021-11-27T02:05:00Z
object [?] GitHub markdown for manuscript: Packaging research artefacts with RO-Crate
resultComment [?] Response to peer review, Data Science submission 706-1686
Items that reference this one
mentions [?] Packaging research artefacts with RO-Crate


Go to: ResearchObject.org

@id https://www.researchobject.org/
name [?] ResearchObject.org
@type Organization
url [?] https://www.researchobject.org/
Items that reference this one
publisher [?] Packaging research artefacts with RO-Crate
parentOrganization [?] RO-Crate Community