Proceedings of Workshop on Research Objects (RO2018)

The below articles and abstracts were reviewed to be accepted for RO2018 following the call for contributions. See also the schedule for the corresponding talks.

RO2018 encouraged open peer review, and recommend that reviewers are named and attributed; however reviewers may be anonymous if so desired. Reviews will be added to this page later.

News

  • Added (what will become) published DOI for accepted papers
  • All accepted contributions are Green Open Access

Accepted papers

These short research papers were accepted for talks at RO2018 and will appear in the IEEE eScience 2018 official conference proceedings after the conference.

Stian Soiland-Reyes and Marcos Cáceres (2018):
The Archive and Package (arcp) URI scheme
2018 IEEE 14th International Conference on e-Science (e-Science)
Preprint: https://doi.org/10.5281/zenodo.1320264 [html] [pdf] [research object]
Camera-ready: arXiv:1809.06935 [pdf]
Published: https://doi.org/10.1109/eScience.2018.00018 (preliminary)

Bryce Mecum, Matthew Jones, Dave Vieglais and Craig Willis (2018):
Preserving Reproducibility: Provenance and Executable Containers in DataONE Data Packages
2018 IEEE 14th International Conference on e-Science (e-Science)
Preprint: https://doi.org/10.5281/zenodo.1313218 [pdf]
Camera-ready: https://doi.org/10.5281/zenodo.1420531 [pdf]
Published: https://doi.org/10.1109/eScience.2018.00019 (preliminary)

Raul Palma, Andrés García-Silva, Jose Manuel Gomez-Perez and Marcin Krystek (2018):
A Research Object-based Toolkit to Support the Earth Science Research Lifecycle
2018 IEEE 14th International Conference on e-Science (e-Science)
Preprint: https://doi.org/10.24424/ro-id.J8MDSX693G [pdf] [research object]
Camera-ready: https://doi.org/10.24424/ro-id.DBIMALEDRQ [pdf] [html .zip] [research object]
Published: https://doi.org/10.1109/eScience.2018.00020 (preliminary)

Publications in the IEEE eScience 2018 proceedings will be delayed open access after one year. To encourage Green Open Access before that we recommended paper authors post their camera-ready version on arXiv or their institutional preprint server according to IEEE’s article sharing policies.

Accepted for talks

These abstracts have been accepted for talks at RO2018:

Anita Bandrowski, Tom Gillespie and Mary Ann Martone (2018):
Research Resource IDentifiers for Key Biological Resources
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1412731

Daniella Lowenberg and Elizabeth Hull (2018):
Community Needs and Priorities for the Future of Open Data Publishing: Dryad & California Digital Library
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1299320

Rachael Lammey (2018):
Mapping relationships between research objects
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1410238

Jo Barratt and Serah Rono (2018):
Frictionless Data and Data Packages
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1301152

Folker Meyer, Robert Finn, Wolfgang Gerlach, Alex Mitchell, Travis Harrison, Andreas Wilke (2018):
On the way to research objects for environmental genomics (or metagenomics)
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1309962

Ravi Madduri, Kyle Chard, Michael D’Arcy, Segun Jung, Alexis Rodriguez, Dinanath Sulakhe, Eric Deutsch, Cory Funk, Ben Heavner, Matthew Richards, Paul Shannon, Gustavo Glusman, Nathan Price, Carl Kesselman and Ian Foster:
Reproducible big data science: A case study in continuous FAIRness
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1310034

Peter Wittenburg, Dimitris Koureas, Larry Lannom and Robert Quick:
Implementing a Flexible Infrastructure for a Digital Object Based Data Management
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1310621

Michael Aufreiter and Naomi Penfold:
The Reproducible Document Stack reinvents the journal publication for a world of computationally reproducible research
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1311612

Peter Sefton, Michael Lynch, Gerard Devine and Duncan Loxton:
DataCrate: a method of packaging, distributing, displaying and archiving Research Objects
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1445817 (html) (pdf) (DataCrate) (zip)

Oya Beyan, Andrea Wuchner, Dirk Eisengräber-Pabst, Christoph Quix, Christian Zaschke and Oliver Schumacher:
Research Data in the Fraunhofer Digital Project: Creating a FAIR Research Data Infrastructure and Culture
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1441011

Stian Soiland-Reyes, Farah Zaib Khan, Richard O. Sinnott, Andrew Lonie, Michael R Crusoe and Carole Goble:
Capturing interoperable reproducible workflows with Common Workflow Language (submitted as article)
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1312623

Kristi Holmes, Karen Gutzman, Patricia Smith, David Eichmann and Melissa Haendel:
Making it count: a computational approach to attribution
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1312651

Carole Goble, Stian Soiland-Reyes and Sean Bechhofer
Research Object Community Update
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1313066

Paolo Manghi, Michele Manunta, Miriam Baglioni, Alessia Bardi, Francesco Casu, Claudio De Luca and Argiro Kokogiannaki:
Enabling Open Science publishing for Research Infrastructures via OpenAIRE: The EPOS use-case (submitted as article)
At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
https://doi.org/10.5281/zenodo.1412509

Accepted for poster/demo

These submissions have been accepted for poster/demo session and lightning talks at RO2018:

Edgar Garriga Nogales, Paolo Di Tommaso and Cedric Notredame (2018):
Nextflow integration for the Research Object Specification
Poster. At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
Abstract: https://doi.org/10.5281/zenodo.1323831

David De Roure, Graham Klyne, Kevin Page, John Pybus, David M. Weigl, Pip Willcox (2018):
Digital Music Objects: Research Objects for Music
Poster. At Workshop on Research Objects (RO 2018), 29 Oct 2018, Amsterdam, Netherlands.
Abstract: https://doi.org/10.5281/zenodo.1442453