Nanopublications

Posted by & filed under .

Nano publications provides a model and vocabulary for describing a scientific statement – along with the context for that statement – in a machine readable manner.   From nanopub.org: A publication is the smallest unit of publishable information: an assertion about anything that can be uniquely identified and attributed to its author. Individual nanopublications can… Read more »

Research Object (RO) Model

Posted by & filed under .

RO Model Core The core concepts of research objects, identity, aggregation, and annotation, are captured in the specification of the ro model. The specification of this core research object model is described in the ro ontology under the namespace http://purl.org/wf4ever/ro#. Extensions There are also the following ontology implementations of extensions to the core research object model: The roevo model… Read more »

ReproZip

Posted by & filed under .

Reprozip is a project led by Prof. Juliana Freire at NYU, to develop a tool that makes it easier for authors to publish reproducible results and for reviewers to validate these results. By tracking operating system calls, ReproZip systematically captures detailed provenance of existing experiments, including data dependencies, libraries used, and configuration parameters. This information is combined… Read more »

VIVO-ISF Ontology

Posted by & filed under .

VIVO is an open source application implementing semantic web principles and technologies to represent academic research communities. When populated with researcher interests, activities, and accomplishments, VIVO enables the discovery of research and scholarship across disciplines at one institution or across many. The Integrated Semantic Framework ontology modules for VIVO (the VIVO-ISF ontology) provide a set of types… Read more »

Combine Archive

Posted by & filed under .

“A COMBINE archive is a single file containing the various documents (and in the future, references to documents), necessary for the description of a model and all associated data and procedures. This includes for instance, but not limited to, simulation experiment descriptions, all models needed to run the simulations and associated data files. The archive is encoded… Read more »